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Timeline
02/08/12: Today
- 20:08 Changeset [10789] by
- Added getTypedValue to Molgenis field types
- 16:45 Changeset [10788] by
- Commented out instanciation of Quartz scheduler for now because of hidden …
- 16:07 Changeset [10787] by
- Implemented special toString for MolgenisRequest?, which breaks off large …
- 15:43 Changeset [10786] by
- Working on MolgenisService? that runs a Quartz job to periodically clean up …
- 11:17 Changeset [10785] by
- Added the 'user.war' service to the standalone tools. Details in the …
- 11:10 Changeset [10784] by
- Redeployed the service (a tiny WAR file, 2141 bytes) to retrieve the …
- 09:49 Changeset [10783] by
- defining variables now in constructor
02/07/12: Yesterday
- 22:35 Changeset [10782] by
- add decimal datatype in generic importer
- 22:34 Changeset [10781] by
- Improved the tree view. When click on the branch, the detail information …
- 21:18 Changeset [10780] by
- Got fed up with BBMRI Hudson fails so fixed them by importing the right …
- 17:18 Changeset [10779] by
- Added two new protocols + Improved many other protocols
- 17:10 Changeset [10778] by
- 17:09 Changeset [10777] by
- Parametrized Oracle database passwords removed an replaced by user console …
- 17:00 Changeset [10776] by
- Reverted commit of unnecessary additional JAR libraries and a RAR file.
- 16:53 Changeset [10775] by
- Porting WormQTL enhancements back to xQTL vanilla: * Removed unused xQTL …
- 16:42 Changeset [10774] by
- Added Locations to Add and Wean Animals
- 16:37 Changeset [10773] by
- Repaired links that would break on proxied app deployment
- 16:29 Changeset [10772] by
- updated for new templates
- 16:24 Changeset [10771] by
- the build for lifelines catalogue.
- 16:16 Changeset [10770] by
- Missing jars for jpa and mysql.
- 16:09 Changeset [10769] by
- Added details in tree , adding category in JQueryTreeViewElement,
- 16:04 Changeset [10768] by
- Added category in constructor. commented …
- 15:14 Changeset [10767] by
- Bugfix: inverted class name check for hiding Register link, so it also …
- 14:15 Changeset [10766] by
- Add java types to FieldType?
- 11:53 Changeset [10765] by
- Remove spurious exception; remove duplicate matrixviewer from UI
- 11:51 Changeset [10764] by
- Remove exception in JPA generator to be consistent with JDBC
- 11:23 Changeset [10763] by
- fix ui with latest Lifelines tree plugins.
02/06/12:
- 17:41 Changeset [10762] by
- Restored another essential piece of code @Joris, Daan: please ask before …
- 17:20 Changeset [10761] by
- Restored MatrixViewer? constructors. (In the constructor where you can …
- 17:01 Changeset [10760] by
- Fixed filtering in non-MV matrix viewer
- 16:57 Changeset [10759] by
- Fix compile error
- 16:45 Changeset [10758] by
- Fold changes from researchPortal branch into trunk
- 16:15 Changeset [10757] by
- Fold changes from research dev branch that got lost in merge into trunk
- 15:42 Changeset [10756] by
- new war file, IE9 alert
- 15:40 Changeset [10755] by
- moved css for alert to correct folder
- 15:36 Changeset [10754] by
- IE9 check to alert user to turn on compatibility view.
- 15:30 MolgenisScrum/Backlog edited by
- (diff)
- 14:36 Changeset [10753] by
- Correct auto-redirect
- 14:30 MolgenisScrum/Backlog edited by
- (diff)
- 14:05 Changeset [10752] by
- Replaced import of no longer existent login.xml from XGAP by standard from …
- 13:28 Changeset [10751] by
- Bugfix
- 13:17 Changeset [10750] by
- Bug fix: recursively adding the category ids of measurement in tree node.
- 11:26 Changeset [10749] by
- Added a extra control for empty request.
- 10:55 Changeset [10748] by
- new war file, error checking
- 10:52 Changeset [10747] by
- Fix test (?)
- 10:51 Changeset [10746] by
- slight text change in error message
- 10:32 Changeset [10745] by
- Try to make test work on both Erik's laptop and Hudson server
- 10:05 Changeset [10744] by
- Give Admin standard read-rights on FDD investigation. First 10 …
- 09:49 CatalogMinutes20120203 edited by
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- 09:48 CatalogMinutes20120203 edited by
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- 08:20 Changeset [10743] by
- Minor adjustments
02/05/12:
- 15:07 Milestone Sprint 15 - 12.02 - Team 2 completed
- Team: Pieter, Martijn, Freerk, George, Marcel B, Alex See open todo at …
- 14:56 Milestone Sprint 15 - 12.02 - Team 1 completed
- Team: Erik, Roan, Joris, Joeri, Robert, Despoina, Chao See open todo at …
02/04/12:
- 22:51 Changeset [10742] by
- error checking
- 14:36 Changeset [10741] by
- Bugfix: Expressions for numerical comparisons where casted to strings.
02/03/12:
- 17:14 Changeset [10740] by
- Hotfix: nullpointer for query in multiplot overview
- 16:50 Changeset [10739] by
- * Fixed Investigation overview plugin bug that causes the overview to …
- 16:18 Changeset [10738] by
- Fixed bug in weaning!
- 16:14 DespoinaLog/2012/02/03 edited by
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- 16:13 DespoinaLog/2012/02/03 edited by
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- 16:13 DespoinaLog/2012/02/03 edited by
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- 16:10 DespoinaLog/2012/02/03 edited by
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- 16:08 DespoinaLog/2012/02/03 created by
- 16:06 DespoinaLog edited by
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- 16:04 CatalogMinutes20120203 edited by
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- 16:04 Catalogue edited by
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- 16:03 Catalogue edited by
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- 15:55 Changeset [10737] by
- Hopefully fixed problem with clicking radio button
- 15:51 Changeset [10736] by
- More error correction
- 15:27 Changeset [10735] by
- Missing code
- 15:25 Changeset [10734] by
- Attempt to repair Hudson
- 15:00 Changeset [10733] by
- Finished new Importer for pre-fill data
- 14:59 CatalogMinutes20120203 edited by
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- 14:42 CatalogMinutes20120203 edited by
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- 14:39 CatalogMinutes20120203 edited by
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- 14:28 CatalogMinutes20120203 edited by
- (diff)
- 14:08 CatalogMinutes20120203 edited by
- (diff)
- 14:07 Changeset [10732] by
- Improved QC Report at end of in-house pipeline.
- 14:02 CatalogMinutes20120203 edited by
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- 14:01 CatalogMinutes20120203 edited by
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- 14:00 CatalogMinutes20120203 edited by
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- 14:00 CatalogMinutes20120203 edited by
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- 13:59 CatalogMinutes20120203 edited by
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- 13:59 CatalogMinutes20120203 edited by
- (diff)
- 13:59 CatalogMinutes20120203 created by
- 13:58 Catalogue edited by
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- 10:01 Changeset [10731] by
- Fixed layout problem of QTLFinder for Chrome/Opera? (makes it slightly …
02/02/12:
- 23:57 Changeset [10730] by
- Working on version 2 of the QTLFinder plugin for WormQTL. Fix and tweaks …
- 23:24 Changeset [10729] by
- Working on version 2 of the QTLFinder plugin for WormQTL. Added QTL …
- 22:31 Changeset [10728] by
- Progress on new FillAnimalDB. Only add species, backgrounds and sources …
- 20:01 Changeset [10727] by
- Working on version 2 of the QTLFinder plugin for WormQTL.
- 17:21 Changeset [10726] by
- Re-commit of already corrected errors
- 17:11 Changeset [10725] by
- should fix compilation problem
- 17:08 Changeset [10724] by
- 17:07 Changeset [10723] by
- 17:06 Changeset [10722] by
- New methods for Measurement and Category creation
- 17:01 Changeset [10721] by
- Added and commented plugins.autohidelogin.AutoHideLoginSwitchService?. …
- 16:56 Changeset [10720] by
- Added category in JqueryTree?
- 16:51 Changeset [10719] by
- Added and commented plugins.autohidelogin.AutoHideLoginSwitchService?. …
- 16:15 Changeset [10718] by
- Merge research portal branch into main
- 16:02 Changeset [10717] by
- Prepare for merge; Ignore pc-specific settings
- 16:01 Changeset [10716] by
- Prepare for merge, plus ignore pc-specific settings
- 16:00 Changeset [10715] by
- Progress on new FillAnimalDB
- 16:00 Changeset [10714] by
- Merged research portal branch
- 15:58 Changeset [10713] by
- Prepare for merge with branch ignore pc-specific settings
- 15:55 Changeset [10712] by
- unversion settings
- 15:54 Changeset [10711] by
- ignore pc-specific settings
- 15:43 Changeset [10710] by
- compile errors fixed
- 14:35 Changeset [10709] by
- Merge trunk
- 14:33 Changeset [10708] by
- Small layout/import improvements
- 14:28 Changeset [10707] by
- More merge stuff
- 14:23 Changeset [10706] by
- commit for merge
- 14:23 Changeset [10705] by
- Start of work to put all the pre-fill data in csv's and load it using …
- 14:12 Changeset [10703] by
- Made fields publicly accessible.
- 13:34 Changeset [10702] by
- Hidden all the new fields from the Deletable entity inheritance that was …
- 13:34 Changeset [10701] by
- Change to build
- 13:33 Changeset [10700] by
- As discussed on the mailinglist: Moved the unique name constraint in Pheno …
- 13:14 Changeset [10699] by
- updated smoking validation
- 12:51 Changeset [10698] by
- Actual merge of trunk/this branch
- 12:44 Changeset [10697] by
- merge from trunk
- 12:35 Changeset [10696] by
- Merge trunk into branch
- 12:29 Changeset [10695] by
- Merge research portal branch
- 11:30 Changeset [10694] by
- commit for merge
- 11:29 Changeset [10693] by
- Added search plugin to gui.
- 11:04 Changeset [10692] by
- Removed obsolete throws
- 10:40 Changeset [10691] by
- PG and Litter wizards: clear variables after successful add Set something …
- 10:03 Changeset [10690] by
- commit for merge
02/01/12:
- 15:59 Changeset [10689] by
- Simplified the check for probe annotation file on WormQTL import procedure
- 15:55 Changeset [10688] by
- Changes to GoNL app: - Removed unused imports. - Used DatabaseFactory? …
01/31/12:
- 18:39 Changeset [10687] by
- Fixed a bug regarding transactions in CsvImport?. The transaction commit …
- 17:35 Changeset [10686] by
- re-enabled transactions on the CsvImport? (fixes request of Joeri + GoNL)
- 16:59 Changeset [10685] by
- Set Mother / Father also on animals themselves so we can easily see in the …
- 16:11 Changeset [10684] by
- commit for merge
- 15:03 Changeset [10683] by
- ApplyProtocol? is no longer available for normal users, so removed it from …
- 14:46 Changeset [10682] by
- Important message for ADB frontpage
- 12:56 Changeset [10681] by
- Last fixes for feedback plugin and user creation
- 12:45 Changeset [10680] by
- rearranged menu
- 12:16 Changeset [10679] by
- Last commits before kick-off
- 11:22 Changeset [10678] by
- Implemented 'one button database recovery' procedure for WormQTL. To …
- 10:50 Changeset [10677] by
- All queries and matrix initializations used in AnimalDB now take Deletion …
- 09:43 Changeset [10676] by
- Added new WormQTL banner used as application header. Thanks to Konrad for …
- 09:24 Changeset [10675] by
- Error correction for targets now working. Timeline and VWA report 4 …
01/30/12:
- 18:20 Changeset [10674] by
- Implemented the automatic hiding of the UserLogin? tab for WormQTL. By …
- 17:34 Changeset [10673] by
- Progress on error correction plugins
- 15:27 Changeset [10672] by
- Added fields for deletion-flagging to Observation and ObservationElement? …
- 15:07 xQTLBiologistBrowse edited by
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- 15:02 xQTLBiologistImport edited by
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- 14:57 xQTLAdministratorInstall edited by
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- 14:28 Changeset [10671] by
- - Add new latex protocol for QC report at end of pipeline - Add Freemarker …
- 14:15 xQTLIntroduction edited by
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- 14:15 xQTLIntroduction edited by
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- 14:11 xqtl edited by
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- 14:11 xQTLAdministratorDownload edited by
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- 13:45 Changeset [10670] by
- Removed unneeded model files
- 13:10 Changeset [10669] by
- compile errors fixed in catalog
- 13:09 Changeset [10668] by
- compile errors fixed in catalog
- 13:05 Changeset [10667] by
- compile errors fixed in catalog
- 12:49 Changeset [10666] by
- Fixes to csv exporter
- 12:48 Changeset [10665] by
- CSV fixes
- 12:36 Changeset [10664] by
- Finished Location plugin
- 12:22 MolgenisServers edited by
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- 12:12 MolgenisServers edited by
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- 11:27 Changeset [10663] by
- Save visible csv as csv, not xls..
- 11:10 Changeset [10662] by
- Added DatabaseLogin? as auth class.
- 11:09 Changeset [10661] by
- Added Userlogin to GUI.
- 11:08 Changeset [10660] by
- Renamed SeqFeature? to SequenceCharacteristic?.
- 10:28 xQTL edited by
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- 10:17 Changeset [10659] by
- new war file, removed db filled and unnecessary text files
- 10:15 Changeset [10658] by
- small detail layout
- 10:01 Changeset [10657] by
- Solved troubles with values of xref and select boxes
- 09:57 Changeset [10656] by
- Removed 'name' column (consistency with other exports)
- 09:52 Changeset [10655] by
- Minor bugfixes to csvexporter
- 09:36 Changeset [10654] by
- Removed unused Ant scripts and commented out unimplemented plugin in xQTL …
01/29/12:
- 21:57 Changeset [10653] by
- layout
- 21:55 Changeset [10652] by
- text
- 21:55 Changeset [10651] by
- text
- 21:54 Changeset [10650] by
- text
01/28/12:
- 18:35 Changeset [10649] by
- Removed 'select' parameter from Download plugin refresh link.
01/27/12:
- 17:27 Changeset [10648] by
- new war file and removal old files
- 17:16 Changeset [10647] by
- additional description plugin
- 17:15 Changeset [10646] by
- removed old figures
- 17:15 Changeset [10645] by
- New version how to setup your won pdf
- 17:14 Changeset [10644] by
- Text changes
- 17:14 Changeset [10643] by
- Description perspectives
- 17:14 Changeset [10642] by
- Additional description for perspectives and name change description …
- 17:13 Changeset [10641] by
- text changes
- 17:10 Changeset [10640] by
- Work on Location plugin
- 16:19 Changeset [10639] by
- Restored the original plugin names to work with existing permissions for …
- 16:07 Changeset [10638] by
- Finished Roelof todo's
- 15:15 Changeset [10637] by
- Enhancements to xQTL datamodel and GUI: * 'Browse / add data' is now …
- 14:55 MolgenisServers edited by
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- 14:13 Changeset [10636] by
- Removed 'select' parameter from Download plugin refresh link.
- 13:17 Changeset [10635] by
- Added CSV exporter
- 11:27 Changeset [10634] by
- Work in progress on Roelof's todo's
- 11:10 Changeset [10633] by
- layout
- 11:09 Changeset [10632] by
- layout
- 11:09 Changeset [10631] by
- new figures, old ones removed
- 10:39 Changeset [10630] by
- text changes + name file download
- 10:38 Changeset [10629] by
- removed old db
- 10:03 Changeset [10628] by
- Set target="_self" in the "View" menu.
- 09:34 Changeset [10627] by
- Spss exporter Types added, null support. The strange think is that in …
- 09:15 Changeset [10626] by
- Added Quartz lib to Molgenis classpath
01/26/12:
- 18:55 Changeset [10625] by
- tutorial figure
- 18:55 Changeset [10624] by
- layout
- 18:55 Changeset [10623] by
- layout
- 18:54 Changeset [10622] by
- doc set up your own
- 18:54 Changeset [10621] by
- layout, small bug fixes
- 18:54 Changeset [10620] by
- Added quartz.
- 18:34 Changeset [10619] by
- Added plugin for background downloads.
- 17:11 Changeset [10618] by
- New TODOs from session with Roelof
- 16:37 MolgenisServers edited by
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- 16:05 MolgenisServers edited by
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- 16:03 MolgenisServers edited by
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- 15:59 Changeset [10617] by
- new war file
- 14:45 Changeset [10616] by
- Revert to previous version because the behaviour was changed. The change …
- 13:50 Changeset [10615] by
- rearranged menu
- 13:47 Changeset [10614] by
- rearranged menu and corrected redirectURL.
- 13:45 Changeset [10613] by
- Spss exporter Types added, null support. The strange think is that in …
- 13:44 Changeset [10612] by
- Spss exporter Types added, null support. The strange think is that in …
- 13:39 Changeset [10611] by
- Give user some more feedback on progress
- 13:19 Changeset [10610] by
- Made writing whole tuples to std out optional
- 12:54 Changeset [10609] by
- new war file
- 12:53 Changeset [10608] by
- Retrieve contextPath from HttpServletRequest? if available (tomcat, jboss …
- 12:47 Changeset [10607] by
- Removed non-utf8 character
- 11:08 Changeset [10606] by
- Fixed bug, removing unnecessary code
- 09:09 Changeset [10605] by
- Different way of handling unmatched individuals
- 08:39 Changeset [10604] by
- Added missing CSVReader jar for Anco's tests. (By the way, did you know …
01/25/12:
- 18:16 Changeset [10603] by
- (Re)set form values on changing the 'numMismatches' SelectInput?. Otherwise …
- 16:48 Changeset [10602] by
- WormQTL visualization work: Enhanced multiplot with coloured chromosomes, …
- 16:20 Changeset [10601] by
- Data test cleanup: combined some files.
- 15:32 Changeset [10600] by
- Refactored order --> download.
- 15:19 Changeset [10599] by
- new war file
- 15:14 Changeset [10598] by
- new war file
- 14:55 Changeset [10597] by
- Rename of project jamboreecards into c2cards.
- 14:14 MolgenisServers edited by
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- 14:14 MolgenisServers edited by
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- 14:13 Changeset [10596] by
- Initial version of data test for smoking additions to the Stage database.
- 14:02 SopUseGenericImporter edited by
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- 13:57 SopUseGenericImporter edited by
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- 13:56 SopUseGenericImporter edited by
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- 13:55 SopUseGenericImporter created by
- 13:36 Changeset [10595] by
- Rename of project jamboreecards to c2cards.
- 13:30 Changeset [10594] by
- new db content
- 13:21 Changeset [10593] by
- 'separate' instead of 'collapse' for tables
- 13:21 Changeset [10592] by
- Removed condition that column names cannnot be longer than 30 chars.
- 13:17 Changeset [10591] by
- Standard text about version molgenis not in popups. Different jquery …
- 13:16 Changeset [10590] by
- Layout change gridpanel and repeatingpanel. Hack to remove empty option in …
- 13:13 Changeset [10589] by
- commented out isVisible() function
- 13:11 Changeset [10588] by
- removal system.outs, layout
- 11:41 Changeset [10587] by
- Created branch molgenis_c2cards for the c2cards project.
- 10:55 Changeset [10586] by
- generic importer index bug fixed
- 10:55 Changeset [10585] by
- finalize Matrix for catalogue
- 00:36 Changeset [10584] by
- SPSS Exporter implemented (needs testing)
01/24/12:
- 18:10 Changeset [10583] by
- 17:59 Changeset [10582] by
- Novel QC report protocol
- 17:57 Changeset [10581] by
- - Added a latex template for QC report - Novel QC statistics protocol …
- 17:00 Changeset [10580] by
- small name change column
- 17:00 Changeset [10579] by
- layout
- 17:00 Changeset [10578] by
- text, small name change, removal system.outs
- 16:59 Changeset [10577] by
- empty db scheme
- 16:50 Changeset [10576] by
- changed icon for download. (not checkout)
- 16:35 Changeset [10575] by
- Refactored order --> download.
- 16:24 Changeset [10574] by
- Refactored order --> download.
- 16:18 Changeset [10573] by
- Refactored order --> download. Added a table instead of div for showing …
- 15:43 Changeset [10572] by
- Committed TODOs for Thursday
- 15:40 Changeset [10571] by
- Working import for IBD data!
- 14:25 Changeset [10570] by
- Importer + other extensions for IBD Portal
- 11:56 Changeset [10569] by
- Started work on IBD Portal app for Noortje
- 11:15 Changeset [10568] by
- Replaced more occurrences of ${user.dir} with ${basedir} in several Ant …
- 10:49 Catalogue edited by
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- 10:47 Catalogue edited by
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- 10:45 Catalogue edited by
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01/23/12:
- 18:30 Changeset [10567] by
- Bugfix: wrong phenotype names were used in statistics queries.
- 18:14 Changeset [10566] by
- Bugfix: some code still used Patient n:1 Mutation.
- 18:05 Changeset [10565] by
- Replaced some occurrences of ${user.dir} with ${basedir} in the …
- 17:37 Changeset [10564] by
- Change in datamodel: Patient m:n Mutation
- 17:34 Changeset [10563] by
- Work on Managing animals in locations
- 17:07 Changeset [10562] by
- Moved exporters to utils subpackage. Removed redundant other exporter. …
- 16:58 Changeset [10561] by
- Removed .classpath file from SVN repo and added to svn:ignorea and added …
- 16:55 Changeset [10560] by
- Added dependency on molgenis framework back to …
- 16:21 Changeset [10559] by
- layout and tutorial images
- 16:20 Changeset [10558] by
- text and layout
- 16:20 Changeset [10557] by
- doc setupyourown
- 15:52 Changeset [10556] by
- Extracted exporter interface; fixed bug with pagination export of excel; …
- 15:33 Changeset [10555] by
- Major bugfix in ApplyProtocol?: fixed xrefs
- 13:52 Changeset [10553] by
- Finished Excel exporter
- 13:28 Changeset [10552] by
- Excel exporter work in progress. Switched to scrollableResultSet
- 13:27 CatalogMinutes20120123 edited by
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- 13:12 CatalogMinutes20120123 edited by
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- 13:11 CatalogMinutes20120123 edited by
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- 13:10 CatalogMinutes20120123 edited by
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- 13:09 CatalogMinutes20120123 edited by
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- 13:08 CatalogMinutes20120123 edited by
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- 13:07 CatalogMinutes20120123 edited by
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- 13:06 Catalogue edited by
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- 13:04 CatalogMinutes20120123 created by
- 13:04 Catalogue edited by
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- 12:52 Changeset [10551] by
- Switch Excel exporter from result list to streaming resultSet
- 11:48 Changeset [10550] by
- Extra correction
- 11:38 Changeset [10549] by
- Updated AnimalDB test to new menu structure
- 11:18 Changeset [10548] by
- Excel exporter work in progress
- 10:25 Changeset [10547] by
- Excel exporter fixed
- 09:45 Changeset [10546] by
- Added getChoiceLabel() for the label according to the user choice .
- 00:17 Changeset [10545] by
- layout
- 00:17 Changeset [10544] by
- text
- 00:17 Changeset [10543] by
- text
- 00:16 Changeset [10542] by
- Small bug fix, repeating adding db to list
01/21/12:
- 22:00 Changeset [10541] by
- Finished draft version of the 'all-in-one' QTL plot, which can visualize …
01/20/12:
- 17:39 Changeset [10540] by
- Location importer ready
- 17:38 Changeset [10539] by
- About info
- 17:37 Changeset [10538] by
- small db scheme change and additional "plugin"
- 17:37 Changeset [10537] by
- layout and images for manual
- 17:36 Changeset [10536] by
- Text changes, small bug fixes, name change manual/tutorial.
- 16:56 Changeset [10535] by
- Work on extracting matrix export from matrixviewer into separate …
- 16:38 Changeset [10534] by
- Settings plugins
- 16:38 Changeset [10533] by
- 1) changes name of addingMeasurementTotree to addingTotree, since it is …
- 15:23 Changeset [10532] by
- Version of this file that should work for all of us. It is SAFE to update …
- 15:19 Changeset [10531] by
- second attempt to delete package
- 15:13 Changeset [10530] by
- Improvements to Location plugin
- 14:03 Changeset [10529] by
- Changes to AnimalDB UI as discussed with Ate
- 14:03 Changeset [10528] by
- Separated details add checkbox in two columns.
- 13:00 Changeset [10527] by
- Set EOL style to native for all *.csv files.
- 11:59 Changeset [10526] by
- Added commons-io-1.3.1.jar to compute distro.
- 11:59 Changeset [10525] by
- Replaced dependency on com.google.common.io framework with dep on …
- 11:43 Changeset [10524] by
- - Added QCStatistics template at end of pipeline that produces tilted …
- 09:54 Changeset [10523] by
- Work on attaching new backend to matrix viewer
- 02:24 Changeset [10522] by
- layout
- 02:24 Changeset [10521] by
- text and layout
01/19/12:
- 22:52 Changeset [10520] by
- small text change
- 19:00 Changeset [10519] by
- small db scheme change
- 19:00 Changeset [10518] by
- help icon
- 19:00 Changeset [10517] by
- tutorial figures
- 19:00 Changeset [10516] by
- layout
- 18:59 Changeset [10515] by
- text change
- 18:59 Changeset [10514] by
- text and small bug fix
- 17:19 Changeset [10513] by
- Made LL front page clearer, you can see now which study it is about
- 16:40 Changeset [10512] by
- Created a part in the importer called updater, it will check in the db if …
- 15:44 Changeset [10511] by
- Removed obsolete 'lifelinespheno' app. If you still need something from …
- 15:37 Changeset [10510] by
- Switched AnimalDB back to MySQL
- 15:30 TomcatManual edited by
- (diff)
- 15:11 Changeset [10509] by
- After adding new orders and approved by superusers, the matrix will be …
- 14:46 Changeset [10508] by
- Rename PredictionModel? to GenericImporter?
- 14:28 Changeset [10507] by
- Rename PredictionModel? to GenericImporter?
- 13:03 Changeset [10506] by
- added argument in setTreeView …
- 12:59 Changeset [10505] by
- removed JQueryTreeViewElementMeasurements, wchich is now …
- 12:57 Changeset [10504] by
- make lifelines app suitable for standalone
- 12:55 Changeset [10503] by
- clean up
- 11:21 Changeset [10502] by
- Added Institute in √JQueryTreeViewElementObject's constructor.
- 11:15 Changeset [10501] by
- Added Institute in √JQueryTreeViewElementObject
- 11:05 Changeset [10500] by
- clean up
- 09:53 Changeset [10499] by
- Make sure DEC subprojects are shown in the order of their DecNrs?
- 09:26 Changeset [10498] by
- old css removed
- 09:26 Changeset [10497] by
- Text changes
- 01:43 Changeset [10467] by
- Added templates for MOLGENIS/compute to distro.
- 01:43 Changeset [10382] by
- Switch to MV sliceable matrix; fixes to project
- 01:42 Changeset [10290] by
- * Added new / improved protocols up to HSpe22.variant_annotator * Now: …
- 01:41 Changeset [10162] by
- layout
- 01:41 Changeset [10160] by
- changed button to image type
- 01:41 Changeset [10158] by
- Download to target="_blank".
- 01:41 Changeset [10156] by
- Deprecated AbstractMolgenisServlet?, if you are still using this: please …
- 01:40 Changeset [10072] by
- Reverted to 10028, but now also skipping an assert statement that always …
- 01:40 Changeset [10069] by
- Tweaked xQTL Selenium test to see if it runs better: just click instead of …
- 01:39 Changeset [9967] by
- layout
- 01:39 Changeset [9869] by
- added check : if user logged in, log out first, and login as admin . …
- 01:39 Changeset [9866] by
- 01:38 Changeset [9863] by
- Hotfix: user registration now possible again
- 01:38 Changeset [9862] by
- small changes in positioning and tree elements clicking/
- 01:38 Changeset [9827] by
- Fix: forgot to update a variable
- 01:38 Changeset [9818] by
- Name changes
- 01:38 Changeset [9817] by
- Mr Husdson is not happy with my change, so JqueryView?.java reverted to …
- 01:37 Changeset [9720] by
- 01:37 Changeset [9651] by
- Populated the ontology and ontologyTerm tables
- 01:36 Changeset [9564] by
- Fixed copying of FTL files under Windows in Common Build script: \ is also …
- 01:36 Changeset [9557] by
- Working on FrontController architecture. Big commit because of cross …
- 01:36 Changeset [9513] by
- extract individuals from the domain
- 01:35 Changeset [9463] by
- bugfix that shows mref twice.
- 01:35 Changeset [9382] by
- Bugfixes for case sensitivity changes.
- 01:35 Changeset [9381] by
- Mapped log4j logging to DJWS. Added a default properties file stolen from …
- 01:34 Changeset [9337] by
- Implemented a number of csv-matrix-data preprocessing tools that should …
- 01:33 Changeset [9195] by
- Matrix Viewers now only inputs for father(s) and mother(s) in Parentgroup …
- 01:33 Changeset [9189] by
- More generic initialization of Matrix viewer with list of MatrixQueryRules?
- 01:32 Changeset [9164] by
- Changes required to run standalone server. Also attempt to import data …
- 01:32 Changeset [9057] by
- Updates for Addanimal plugin: * Changed position of genetic background …
- 01:31 Changeset [9025] by
- Optimization of TriToBin? tool
- 01:31 Changeset [8985] by
- Fixing molgenis_test project.
- 01:31 Changeset [8955] by
- cleaned up field descriptions for xQTL final.
- 01:30 Changeset [8847] by
- Applied proper application names to xQTL and xQTL for lifelines. Put web …
- 01:29 Changeset [8706] by
- Shared matrix component work in progress. Cleanup of unused …
- 01:29 Changeset [8684] by
- framework for major update with jquery enhanced UI elements. Default is …
- 01:29 Changeset [8607] by
- Fix to keep the test standalone compilable
- 01:29 Changeset [8598] by
- First work on renderable matrix component. One matrix GUI to rule them …
- 01:29 Changeset [8591] by
- NGS protocol starting with the Demultiplexing step; some changes in UI to …
- 01:28 Changeset [8552] by
- caching EC numbers
- 01:28 Changeset [8521] by
- Added another helper function which adds some crucial permissions for …
- 01:27 Changeset [8494] by
- added cluster + jobid to ComputeApplication?
- 01:27 Changeset [8492] by
- added constructor to work directly with controller, e.g. new …
- 01:27 Changeset [8457] by
- 01:27 Changeset [8453] by
- comment changes
- 01:27 Changeset [8416] by
- First work on genotype labels for Wanda
- 01:27 Changeset [8407] by
- Working on xQTL dev Ant builder :) works like a charm, just needs some …
- 01:27 Changeset [8373] by
- Testing the test! Hudson must break, somewhere…
- 01:26 Changeset [8304] by
- working on xQTL workbench
- 01:25 Changeset [8104] by
- made a change in the emptyDatabase plugin, because of the DatabaseFactory? …
- 01:25 Changeset [8100] by
- Used DatabaseFactory? instead of JDBCDatabase.
- 01:24 Changeset [8044] by
- PLZ clean up shit
- 01:24 Changeset [8040] by
- Changes according to new Molgenis plugin structure (mvc).
- 01:24 Changeset [8013] by
- Trick to keep Hudson happy (I hope).
- 01:24 Changeset [7991] by
- Molgenis Tables visibility bug fix.
- 01:24 Changeset [7986] by
- Code clean-up
- 01:24 Changeset [7984] by
- Also tried to make the BiobankDecorator? Hudson-proof
- 01:24 Changeset [7976] by
- default search to 'any field LIKE' and hide these options until one starts …
- 01:23 Changeset [7947] by
- Changed texts.
- 01:23 Changeset [7885] by
- Used interface Database instead of class JDBCDatabase else it will not …
- 01:22 Changeset [7777] by
- * Improved performance of CS method for getting labeled panels * Improved …
- 01:22 Changeset [7775] by
- Some minor tweaks in file helpers
- 01:21 Changeset [7680] by
- Updates to the irc bot and webserver
- 01:19 Changeset [7409] by
- Now we also map the field types to java fully qualified names used in …
- 01:19 Changeset [7293] by
- Working on v.2 GUI
- 01:18 Changeset [7265] by
- Updated most of the TODO Auto-generated try catch block
- 01:18 Changeset [7261] by
- Warning free java is our goal
- 01:18 Changeset [7212] by
- removed warnings in org.molgenis.util
- 01:18 Changeset [7194] by
- * Removed generated code * Got generation, db creation and app itself …
- 01:18 Changeset [7184] by
- Only 1 warning left in Galaxy, see the TODO associated with it to find a …
- 01:17 Changeset [7038] by
- updated bbmri headers
- 01:17 Changeset [7035] by
- Improved error handling (solves some of the bugs mentioned by Ate and …
- 01:17 Changeset [7031] by
- A few preparations and clarifications for getting rid of the AnimalDB …
- 01:10 Changeset [6247] by
- Made login class singleton to be able to access not only in plugin model.
- 01:10 Changeset [6242] by
- Fixed transferred code (by transferred I mean the integration from pheno …
- 01:09 Changeset [6062] by
- 01:08 Changeset [5885] by
- Added custom loader for XGAP R/qtl panel (strain) OntologyTerms?. Added …
- 01:08 Changeset [5876] by
- Moved properties files to 'properties' folder. Adjusted datamodels to be …
- 01:08 Changeset [5873] by
- Refactoring
- 01:07 Changeset [5851] by
- versie donderdag 25/11, nog bezig.
- 01:07 Changeset [5813] by
- solved bug with multiple xref's label
- 01:06 Changeset [5726] by
- 01:06 Changeset [5718] by
- deleted warnings in .generators
- 01:05 Changeset [5596] by
- Work in progress on XGAP-Pheno model merge.
- 01:04 Changeset [5495] by
- Minor improvements
- 01:04 Changeset [5423] by
- Made improvements to DEC Project and Subproject management UIs
- 01:03 Changeset [5326] by
- Also updated clusterdemo decorators
- 01:02 Changeset [4972] by
- Matrix data verification improved and made consistent with datamodel. …
- 01:01 Changeset [4886] by
- 01:00 Changeset [4816] by
- Working on binary matrix implementation and regression test.
- 00:59 Changeset [4671] by
- Change in package structure, added JFreeChart libs and example.
- 00:59 Changeset [4627] by
- Rebuild the package for RMI
- 00:59 Changeset [4616] by
- 00:57 Changeset [4471] by
- Updated example file and progress control
- 00:57 Changeset [4464] by
- 00:57 Changeset [4426] by
- Output done for now
- 00:57 Changeset [4401] by
- fix getSessionData
- 00:56 Changeset [4343] by
- stuck
- 00:56 Changeset [4294] by
- 00:56 Changeset [4272] by
- 00:54 Changeset [3958] by
- 00:54 Changeset [3923] by
- Got rid of error when updating (maze) database: text field (in this case: …
- 00:54 Changeset [3838] by
- Fixed formatting to be Java-compliant plus removed some old, commented out …
- 00:52 Changeset [3695] by
- Removed old plugins (again).
- 00:52 Changeset [3688] by
- Regenerated and (re)corrected typos
- 00:47 Changeset [2979] by
- Solved problem with showing one of several div's that are stacked on top …
01/18/12:
- 22:09 Changeset [10496] by
- Final commit (for today) of Roelof Hut importer. DECs and Animals in DECs …
- 19:30 Changeset [10495] by
- Bugfix: Reset state of download to INIT. In addition make plugin invisible …
- 19:00 Changeset [10494] by
- Sorting output, EC number fix
- 18:57 Changeset [10493] by
- small change db scheme
- 18:57 Changeset [10492] by
- new logo
- 18:56 Changeset [10491] by
- layout homepage
- 18:56 Changeset [10490] by
- contact info
- 18:55 Changeset [10489] by
- text
- 18:55 Changeset [10488] by
- text, EC number issue resolved
- 18:36 Changeset [10487] by
- MOLGENIS/compute: Relocated README from modules/compute to apps/compute to …
- 17:46 Changeset [10486] by
- Work on DEC import for Roelof
- 16:31 Changeset [10485] by
- Work in progress: QTL results 'all-in-one' plot for WormQTL
- 16:22 Changeset [10483] by
- Changed EOL from \r to \n for *.csv flies from the compute workflows dir.
- 16:13 Changeset [10482] by
- changed the name of JQueryTreeViewElementMeasurement to …
- 15:59 Changeset [10481] by
- changed addMeasurementstoTree to addMeasurements. there was no adding to …
- 15:37 Changeset [10480] by
- Bugfix: Shutdown for scheduler was not working.
- 15:30 Changeset [10479] by
- Bugfix: Shutdown for scheduler was not working.
- 14:32 Changeset [10478] by
- Commented out "on" method call from Lambdaj package which cannot be found.
- 14:24 Changeset [10477]
- This is an empty revision for padding.
- 13:49 MolgenisServers edited by
- (diff)
- 13:47 MolgenisServers edited by
- (diff)
- 13:34 xQTLUserReview edited by
- (diff)
- 13:29 xQTLUserReview edited by
- (diff)
- 13:18 MolgenisServers edited by
- (diff)
- 13:12 MolgenisServers edited by
- (diff)
- 12:02 Changeset [10476] by
- Added another item in ui showing only the approved orders of the user.
- 11:55 Changeset [10475] by
- Clear the orders list.
- 11:49 Changeset [10474] by
- Rename PredictionModel? to GenericImporter?
- 10:11 Changeset [10473] by
- Rename PredictionModel? to GenericImporter?
- 10:11 Changeset [10472] by
- separate tutorial menu
- 10:10 Changeset [10471] by
- text changes
- 10:10 Changeset [10470] by
- text changes
- 10:08 SopNightlyBuild created by
01/17/12:
- 19:40 Changeset [10469] by
- Sorting output download + merge two version of this class
- 19:36 Changeset [10468] by
- layout, ordering isozymes
- 18:06 Changeset [10466] by
- renamed file because conflict with modules/file/README.txt (after build …
- 17:10 Changeset [10465] by
- switch two menu items
- 17:09 Changeset [10464] by
- download overviews
- 17:09 Changeset [10463] by
- datatype to enable sorting isozymes
- 16:44 Changeset [10462] by
- Changes for background download: C2CardsDownload plugin is called, Quartz …
- 15:57 Changeset [10461] by
- Work in progress: QTL results 'all-in-one' heatmap plot for WormQTL
- 15:07 Changeset [10460] by
- Work on attaching new backend to matrix viewer
- 15:00 Changeset [10459] by
- Re-added protocols dir to resolve case sensitivity issues…
- 14:57 Changeset [10458] by
- Removed protocols dir to resolve case sensitivity issues…
- 14:50 Changeset [10457] by
- updates: - using opencsv CSVReader now. - Warning for Matrix columns that …
- 13:35 Changeset [10456] by
- Extended parameter list Added new protocol for QC-statistics And more... …
- 11:50 Changeset [10454] by
- Fix build problems from other peoples' work
- 11:13 Changeset [10453] by
- try to fix merge
- 11:08 Changeset [10452] by
- Fixed accidental behaviour change when adding data matrices. Made the new …
- 11:08 Changeset [10451] by
- try to fix merge
- 10:55 Changeset [10450] by
- try to fix merge
- 10:54 Changeset [10449] by
- try to fix merge
- 10:37 Changeset [10448] by
- Loader updated to m-to-m, user interface needs update!
- 10:15 Changeset [10447] by
- Loader updated to m-to-m, user interface needs update!
01/16/12:
- 22:58 Changeset [10446] by
- Added README.txt for MOLGENIS/compute and updated makedistro ant task to …
- 16:56 Changeset [10445] by
- Loader updated to m-to-m, user interface needs update!
- 16:52 Changeset [10444] by
- Loader updated to m-to-m, user interface needs update!
- 16:52 Changeset [10443] by
- Fixed 2 bugs regarding xQTL matrices: * If the storage file was there, but …
- 16:50 Changeset [10442] by
- 1. Added css styling for orders table 2. Added a setApproved for the new …
- 16:21 Changeset [10441] by
- tutorial image
- 16:21 Changeset [10440] by
- text
- 16:21 Changeset [10439] by
- stats export overviews
- 16:20 Changeset [10438] by
- layout and text
- 16:20 Changeset [10437] by
- Layout, small bug fix
- 15:21 Changeset [10436] by
- (Final?) bug fix concordance template
- 15:14 Changeset [10435] by
- Fixed broken template references in WormQTL header
- 14:32 Changeset [10434] by
- Restored WormQTL header which didn't survive the move. Removed temporary …
- 14:06 Changeset [10433] by
- Reverted erroneously committed files.
- 13:08 Changeset [10432] by
- Added Galaxy config for new machine 'yac7' (Pieter's local test server) to …
01/15/12:
- 22:49 Changeset [10431] by
- change col name
01/14/12:
- 20:42 Changeset [10430] by
- Used absolute path's in order to get rid of unused imports.
01/13/12:
- 22:39 Changeset [10429] by
- Roelof Hut importer: * Animals linked to litters * Stubs for DEC import
- 17:29 Changeset [10428] by
- Importer for Roelof's litters + many small bugfixes. TODO: * link …
- 17:07 Changeset [10427] by
- refining layout output download
- 15:25 Changeset [10426] by
- Added steps flag to make easier for the user to walk through the …
- 14:47 Changeset [10425] by
- * Gene name -> Gene modification * Make width of SelectInput? settable (-1 …
- 14:03 Changeset [10424] by
- 1)Added matrix in the new plugin . Removed css styling of Shopping cart . …
- 09:32 Changeset [10423] by
- Used absolute path's in order to get rid of unused imports.
- 09:31 Changeset [10422] by
- download layout
01/12/12:
- 19:04 Changeset [10421] by
- tutorial image
- 19:04 Changeset [10420] by
- tutorial image
- 19:03 Changeset [10419] by
- layout and text
- 19:03 Changeset [10418] by
- layout and text
- 16:50 Changeset [10417] by
- Update latest changes for merge
- 16:33 Changeset [10416] by
- The button in matrixviewCat works now
- 16:31 Changeset [10415] by
- fixes small isues, added subquery support without sql
- 15:54 Changeset [10414] by
- logos
- 15:53 Changeset [10413] by
- text and layout
- 15:53 Changeset [10412] by
- text and layout
- 15:53 Changeset [10411] by
- text and layout
- 15:42 Changeset [10410] by
- Minor commits before deployment
- 14:47 Changeset [10409] by
- Introduced a shopping cart in new ApproveUser? plugin, where the admin can …
- 14:46 Changeset [10408] by
- Introduced a shopping cart in new ApproveUser? plugin, where the admin can …
- 14:15 Changeset [10407] by
- * Investigation selectbox in Catalog shows selected inv (if any) * …
- 13:47 Changeset [10406] by
- * Catalog: properly expand tree nodes * Catalog: clear shopping cart …
- 13:36 Changeset [10405] by
- 1)generate_plugins done to work as expected! 2)Added a new plugin to …
- 12:26 Changeset [10404] by
- Use VW_BEZOEK_PIVOT instead of BEZOEK, but rename it to BEZOEK
- 11:17 Changeset [10403] by
- Delete empty package
- 11:16 Changeset [10402] by
- Few updates to get LL working again
- 11:04 Changeset [10401] by
- renamed function.
- 11:01 Changeset [10400] by
- Moved two LL plugins from XGAP to LL app Reorganized import packages and …
- 10:59 Changeset [10399] by
- corrected word prove to approve
- 10:55 Changeset [10398] by
- message changed
- 10:53 Changeset [10397] by
- DataModel? for catelogue: Add date time to each order and show multiple …
- 10:31 Changeset [10396] by
- Add if statement to prevent query from throwing an Null-pointer exception
- 10:29 Changeset [10395] by
- A small bug in catalogue matrix. Need to set matrixView = null every time …
- 09:33 Changeset [10394] by
- DataModel? for catelogue: Add date time to each order and show multiple …
- 09:25 Changeset [10393] by
- * When importing LL data, select study to import into using radio buttons …
- 09:22 Changeset [10392] by
- bugfix: resolveForeignKeys now first checks if key exists so there is no …
01/11/12:
- 19:46 Changeset [10391] by
- Use FrontController in col7a1 and chd7 apps.
- 19:27 Changeset [10390] by
- Retrieve contextPath from HttpServletRequest? if available (tomcat, jboss …
- 18:52 Changeset [10389] by
- A bit of refactoring, layout
- 16:53 Changeset [10388] by
- Add date time to each order and show multiple orders in old order form!
- 16:53 Changeset [10387] by
- Add date time to each order and show multiple orders in old order form!
- 16:52 Changeset [10386] by
- Catalogue matrix view. The users could view the individual data on the …
- 15:41 Route edited by
- (diff)
- 15:40 Route edited by
- (diff)
- 11:35 Changeset [10385] by
- small update Matrix Viewer Test
- 10:44 SopUseJQuerytree edited by
- (diff)
- 10:23 Changeset [10384] by
- Fix the bug in which the check boxes in the tree are still ticked after …
01/10/12:
- 19:25 Changeset [10383] by
- Initial version of Ant makedistro task for MOLGENUS/compute added to Ant …
- 17:16 SopUseJQuerytree edited by
- (diff)
- 17:04 Changeset [10381] by
- 16:58 SopUseJQuerytree edited by
- (diff)
- 16:55 SopUseJQuerytree edited by
- (diff)
- 16:53 SopUseJQuerytree edited by
- (diff)
- 16:53 SopUseJQuerytree edited by
- (diff)
- 16:52 SopUseJQuerytree created by
- 16:30 Changeset [10380] by
- Made GenePanel? configurable for showing protein domain names or not.
- 16:13 Changeset [10379] by
- Running compute will now also copy the worksheet and the workflow files, …
- 15:54 Changeset [10378] by
- Added GFF and fasta webservices.
- 14:50 Changeset [10377] by
- Capitalized all protocols in workflow
- 14:42 Changeset [10376] by
- Capitalized protocols filenames.
- 14:35 Changeset [10375] by
- Removed for uppercasing files in protocols
- 14:30 Changeset [10374] by
- 13:36 Changeset [10373] by
- clear the investigation list every time you visit an other page and …
- 13:36 Changeset [10372] by
- fix the bug updating the record by investigation_name!
- 13:30 Changeset [10371] by
- 1) Added dropdown button so the user can select specific investigation. …
- 12:43 Changeset [10370] by
- update frontcontroller
- 12:43 Changeset [10369] by
- update frontcontroller
- 12:33 Changeset [10368] by
- rearranged the buttons
- 12:31 Changeset [10367] by
- 12:30 Changeset [10366] by
- rearranged the button order and added messages.
- 12:09 Changeset [10365] by
- * Set proper investigation name and description during LL import * Removed …
- 11:43 Changeset [10364] by
- Add the matrix plugin in catalogue property file
- 11:28 Changeset [10363] by
- delete data dir, we don't need this for researchportal
- 11:25 Changeset [10362] by
- implemented the export buttons for sample matrix, plus some additional …
- 10:54 Changeset [10361] by
- Separated Importer for Lifelines project
- 10:06 Changeset [10360] by
- created an extra protocol, that is a project specific protocol
- 09:03 Changeset [10359] by
- added date+time to the exported filenames in the Matrix.
- 09:01 MolgenisServers edited by
- (diff)
01/09/12:
- 22:10 MolgenisProperties edited by
- (diff)
- 21:08 Changeset [10358] by
- restore default db_password to 'molgenis'
- 20:59 Changeset [10357] by
- To solve safety issues in database passwords being exposed in SVN: * put …
- 17:37 Changeset [10356] by
- Finalize generic importer version 1.1.1
- 17:18 Changeset [10355] by
- Tree in LL Catalog now remembers state: protocols from which measurements …
- 16:23 Changeset [10354] by
- made some small changes
- 16:00 Changeset [10353] by
- layout
- 15:25 Changeset [10352] by
- downloading
- 15:04 Changeset [10351] by
- First attempt at putting matrix download actions into a menu.
- 15:03 Changeset [10350] by
- Removed lifelinespheno app from common build. Lifelinesresearchportal is …
- 14:35 Changeset [10349] by
- removed comments of checkbox created by jquery .
- 14:11 Changeset [10348] by
- fixed project after move
- 14:10 Changeset [10347] by
- fixed project after move
- 11:51 Changeset [10346] by
- Changed the nillable of subprotocol to false
- 11:07 Changeset [10345] by
- Corrected LifeLines build script (commented out part that doesn't work …
- 10:24 Changeset [10344] by
- ant-build script fixed
- 09:33 Changeset [10343] by
- lifelines Development version. This will not break the normal Molgenis …
- 09:32 Changeset [10342] by
- failed
- 09:26 Changeset [10341] by
- lifelines Development version. This will not break the normal Molgenis …
- 07:13 Changeset [10340] by
- download
- 07:12 Changeset [10339] by
- download
Note: See TracTimeline
for information about the timeline view.
