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Table of Contents
Introduction
MOLGENIS application overview
- Browsing and editing
- CSV file loading
- Connecting to R
- Connecting to SOAP web services
- Connecting to REST web services using CURL
- Molgenis as a datasource for Galaxy
Toolkit Installation
- Preperation on Windows
- Preperation on Ubuntu/Linux
- Installation of Eclipse/Galileo
- Installation of Eclipse/Helios
- Installation of Eclipse/Indigo
- Download MOLGENIS
Generating your own applications
- MOLGENIS workspace basics
- Running the generator
- Modeling a new MOLGENIS
- Modeling an existing database
- molgenis.properties file
Adding plug-ins
Building on the MOLGENIS framework
MOLGENIS Data Modeling Language Reference
MOLGENIS User Interface Modeling Language Reference
MOLGENIS framework API
Frequently asked questions
- How to change molgenis url from /molgenis_distro to xyz
- How to change the MolgenisServlet, e.g. to add more services
- How to extend an existing database model
- Case sensitivity and issues between windows, linux and mac
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
<molgenis>
The <molgenis> element is the root of each MOLGENIS application definition file and can contain data definition and/or user interface definition elements. The model can be split, i.e. there can be multiple MOLGENIS XML files for one application, for example *_db.xml and *_ui.xml (see section on molgenis.properties file). Example usage of the <molgenis> element:
<molgenis name="myfirstdb" label="My First Database"> <menu name="mainmenu"> ... <entity name="firstentity"/> <module name="mymodule"/> ... </molgenis>
Required attributes
- name="name": name of your MOLGENIS blueprint. This will be used by the generator to name the java packages that are generated..
Optional attributes
- label="your label": Label of your MOLGENIS system. This will be shown on the screen as well as heading in the generated documentation.
- Version=”1.2.3”: Version of your MOLGENIS system. It is recommended to use this to manage the versions of your application.