MOLGENIS development manual

• Table of Contents
  • Introduction
    • Introduction
    • Detailed table of contents
  • MOLGENIS application overview
    • Browsing and editing
    • CSV file loading
    • Connecting to R
    • Connecting to SOAP web services
    • Connecting to REST web services using CURL
    • Molgenis as a datasource for Galaxy
  • Toolkit Installation
    • Preperation on Windows
    • Preperation on Ubuntu/Linux
    • Installation of Eclipse/Galileo
    • Installation of Eclipse/Helios
    • Installation of Eclipse/Indigo
    • Download MOLGENIS
  • Generating your own applications
    • MOLGENIS workspace basics
    • Running the generator
    • Modeling a new MOLGENIS
    • Modeling an existing database
    • molgenis.properties file
  • Adding plug-ins
    • Screen plugin
    • Database plugin
    • Email plugin
    • Command plugin
    •  JavaDoc
  • Building on the MOLGENIS framework
    • Database API
    • Customize database mapping with MappingDecorator
    • Using Java Persistency API (JPA)
  • MOLGENIS Data Modeling Language Reference
    • <molgenis> element
    • <module> element
    • <entity> element
    • <field> element
    • <unique> element
  • MOLGENIS User Interface Modeling Language Reference
    • <form> element
    • <menu> element
    • <plugin> element
    • <include> element
  • MOLGENIS framework API
    • Javadoc library reference
  • Frequently asked questions
    • How to change molgenis url from /molgenis_distro to xyz
    • How to change the MolgenisServlet, e.g. to add more services
    • How to extend an existing database model
    • Case sensitivity and issues between windows, linux and mac
    • How to create a hyperlink from plugin to another form
    • How to create a hyperlink from plugin to another form
    • How to create a hyperlink from plugin to another form