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Table of Contents
Introduction
MOLGENIS application overview
- Browsing and editing
- CSV file loading
- Connecting to R
- Connecting to SOAP web services
- Connecting to REST web services using CURL
- Molgenis as a datasource for Galaxy
Toolkit Installation
- Preperation on Windows
- Preperation on Ubuntu/Linux
- Installation of Eclipse/Galileo
- Installation of Eclipse/Helios
- Installation of Eclipse/Indigo
- Download MOLGENIS
Generating your own applications
- MOLGENIS workspace basics
- Running the generator
- Modeling a new MOLGENIS
- Modeling an existing database
- molgenis.properties file
Adding plug-ins
Building on the MOLGENIS framework
MOLGENIS Data Modeling Language Reference
MOLGENIS User Interface Modeling Language Reference
MOLGENIS framework API
Frequently asked questions
- How to change molgenis url from /molgenis_distro to xyz
- How to change the MolgenisServlet, e.g. to add more services
- How to extend an existing database model
- Case sensitivity and issues between windows, linux and mac
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
- How to create a hyperlink from plugin to another form
Language reference
The MOLGENIS application modeling language knows the following elements
Database language (*_db.xml)
- MolgenisElement -- usage of the <molgenis> element
- EntityElement -- usage of the <entity> element
- FieldElement -- usage of the <field> element
- UniqueElement -- usage of the <unique> element
- ModuleElement -- usage of the <module> element
User interface language (*_ui.xml)
- FormElement -- usage of the <form> element
- MenuElement -- usage of the <menu> element
- PluginElement -- usage of the <plugin> element
