News

Observ-OM data model published

Observ-OM and Observ-TAB, the Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information, is published in  Human Mutation. Genetic and epidemiological resear ...

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• Posted: 2012-04-06 10:34
• Author: mswertz
• Categories: observ molgenis
• Comments (0)

CHD7 mutation database published

We are proud with another  MOLGENIS for the CHARGE syndrome using  Observ-OM published in  Human Mutation. CHD7 is a member of the chromodomain helicase DNA- ...

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• Posted: 2012-04-06 10:26 (Updated: 2012-04-06 10:31)
• Author: mswertz
• Categories: observ molgenis
• Comments (0)

xQTL workbench paper published

See  http://bioinformatics.oxfordjournals.org/content/28/7/1042. QTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite ab ...

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• Posted: 2012-03-31 15:57 (Updated: 2012-03-31 15:58)
• Author: mswertz
• Categories: xgap molgenis
• Comments (0)

GenomeNL variation database

The first version of the GenomeNL database is online. Now researchers can already sneak peak the GoNL variant data to verify whether variants observed in their own sample are unique against 25 million SNPs observed in the panel of 500 parents. By Ap ...

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• Posted: 2012-02-20 22:03
• Author: mswertz
• Categories: (none)
• Comments (0)

OntoCAT easy ontology search

With so many ontocat papers published  NBIC has made a newsitem on OntoCAT! n annotating life sciences data, ontologies are quickly gaining im ...

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• Posted: 2011-12-14 22:30
• Author: mswertz
• Categories: (none)
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Rapid generation of biosoftware you want to have

Just download a preconfigured MOLGENIS or generate your own in three steps:

1. Model what you want for your experiment in a simple XML file  example db,  example ui
2. Run the MOLGENIS generator
3. Use your web application  example.

Each MOLGENIS comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Using MOLGENIS

• MolgenisSystemList -- Examples of MOLGENIS powered systems
• MolgenisGuide -- How to generate your own molgenis
• MolgenisDownload -- Get the software
• MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
• MolgenisSystemList -- Catalog of existing MOLGENIS systems you can use as starting point
• MolgenisSourceCode -- Browse and hack the source code
• MolgenisJavaDoc -- Explore the APIs
• MolgenisGoogleGroup -- Join our google group mail forum for all things around MOLGENIS
• Watch it evolve: ChangeLog,  RoadMap

For a complete list of available wiki pages, see the TitleIndex.

Getting involved

 Register and then login to:

• TracGuide -- Read on how to use this website, and how to add content
• MolgenisProject -- Who is currently behind MOLGENIS
• Apply for a MolgenisInternship
• Add to the MolgenisGuide,
• brainstorm new ideas on MolgenisEnhancements
• or hack the MolgenisSourceCode.
• SequencingWiki

MOLGENIS Users

The MOLGENIS project is supported by the University Medical Center Groningen  UMCG, Groningen Bioinformatics Center  GBIC, European Bioinformatics Institute  EBI and the Netherlands Bioinformatics Center  NBIC. Are you curious who is using MOLGENIS, or would like to list your own name, visit the MolgenisUsers? page. Also don't hesitate to add to the MolgenisSystemList