News

OntoCAT easy ontology search

With so many ontocat papers published  NBIC has made a newsitem on OntoCAT! n annotating life sciences data, ontologies are quickly gaining im ...

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• Posted: 2011-12-14 22:30
• Author: mswertz
• Categories: (none)
• Comments (0)

10,000 commits, and the winner is Miranda (AMC)

We are very proud to have had the 10,000 (ten thousand!) commit to the SVN. It has been really incredible how much activity we have seen in the molgenis area the last year with developers from UMCG, RUG, AMC, FIMM, EBI and U Leicester committing regu ...

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• Posted: 2011-12-08 20:19
• Author: mswertz
• Categories: molgenis
• Comments (0)

Netherlands Genome project in New York Times

We were proud to read in the New York Times about the Netherlands Genome project. Even a photograph of our beloved colleage Freerk van Dijk is shown whilst carrying a huge amount of hard disk with terabytes of whole genome sequencing data. Read the f ...

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• Posted: 2011-12-01 19:16
• Author: mswertz
• Categories: gonl molgenis
• Comments (0)

GoNL ready for the next level

The  BBMRI-NL Rainbow Project Genome of the Netherlands project (GoNL) is ready for the next level. It has completed the alignment of all the DNA reads of the 750 individuals, producing a total of 350 billion reads. Based on thes ...

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• Posted: 2011-11-19 09:42 (Updated: 2011-11-19 09:49)
• Author: mswertz
• Categories: gonl molgenis
• Comments (0)

Human metabolic pathway database online

Our collaborator Miranda Stobbe used MOLGENIS to publish a critical assessment of human metabolic pathway databases: a stepping stone for future integration. She compared the genes, EC numbers and reactions of five frequently used human metabolic pa ...

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• Posted: 2011-10-14 17:37 (Updated: 2011-10-14 17:38)
• Author: mswertz
• Categories: molgenis
• Comments (0)

Welcome to MOLGENIS

MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Using the software

MOLGENIS applications:

• xQTL Workbench for multi-level QTL mapping (project)
• Dystrophic Epidermolysis Bullosa (deb-central) mutation database ( project,  publication)
• eXtensible Genotype and Phenotype database (XGAP) (project,  publication)
• Design of Genetical Genomics Experiments (designGG)] ( project,  publication)
• BBMRI-NL biobank catalague ( project)
• MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] ( project,  demo)
• Pheno-OM Phenotype observation model (project,  demo)
• Mouse Resource Browser (MRB) project] ( project,  publication)
• MOLGENIS as data wrapper in Taverna ( publication)
• Animal observation database (AnimalDB) ( project)
• Nordic GWAS control database ( project,  publication)
• GWAS Central curation tool ( project)
• Finnish disease database (FINDIS) ( project)
• Bacterial microarrays database (MOLGEN-IS) ( publication)
• Human Metabolic Pathway Database ( project,  publication)

If you think your project should be listed (differently) please let us know

Developing your own

Generate generate your own in three steps:

1. Model what you want for your experiment in a simple XML file  example db,  example ui
2. Run the MOLGENIS generator
3. Use your web application  example.

See

•  MOLGENIS tutorial
• MolgenisGuide -- How to generate your own MOLGENIS
• MolgenisApps -- Our app suite [in development]
• MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
• MolgenisGoogleGroup -- Join our Googlegroup mail forum for all things around MOLGENIS

Partners

The MOLGENIS project is supported by the University Medical Center Groningen  UMCG, Groningen Bioinformatics Center  GBIC, European Bioinformatics Institute  EBI and the Netherlands Bioinformatics Center  NBIC.