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News

Observ-OM data model published

Observ-OM and Observ-TAB, the Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information, is published in  Human Mutation. Genetic and epidemiological resear ...

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CHD7 mutation database published

We are proud with another  MOLGENIS for the CHARGE syndrome using  Observ-OM published in  Human Mutation. CHD7 is a member of the chromodomain helicase DNA- ...

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xQTL workbench paper published

See  http://bioinformatics.oxfordjournals.org/content/28/7/1042. QTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite ab ...

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GenomeNL variation database

The first version of the GenomeNL database is online. Now researchers can already sneak peak the GoNL variant data to verify whether variants observed in their own sample are unique against 25 million SNPs observed in the panel of 500 parents. By Ap ...

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OntoCAT easy ontology search

With so many ontocat papers published  NBIC has made a newsitem on OntoCAT! n annotating life sciences data, ontologies are quickly gaining im ...

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Welcome to the Genomics Coordination Centre

The center for genomics databases and analysis tools, courses and workshops. See AboutGcc

Genetical Genomics

  • XgapMolgenis - eXtensible Genotype And Phenotype database for GWL and GWA studies
  • RqtlPackage - R package for the analysis of QTL experiments
  • DesignGg - tool for the experimental design of QTL experiments having multiple factors.
  • GwasPipeline - pipeline for genotype quality control and standard analysis
  • GwasPortal - Research platform for LifeLines genetics research
  • GenomicIslandsAnalysis - Software belonging to the NBIC BRS project "A quantitative account of genomic island acquisitions in prokaryotes"

Sequencing

  • SequencingTools - lists tools and manuals we currently have available for Sequencing.
  • SequencingMolgenis - laboratory information system (LIMS) for Illumina sequencing

Mass Spectrometry

Biobanking

  •  AnimalDB - for animal observations
  • PhenotypeMolgenis - file format and database for phenotypic data on human and model organisms
  • LocusSpecificMolgenis - A locus specific database for the Col7a1 gene mutations of which cause dystrophic epidermolysis bullosa
  • GenotypeMolgenis - Genetical information management system (aka GIMS), for the genetics laboratory
  • MicroarrayMolgenis - database for microarray gene expression experiments based on the  MAGE-TAB standard

Internships

Bachelor- and masterstudents are invited to apply for an internship at the GCC. An overview of suitable projects is available at the GccInternships page.

Intranet

  • GccMeetings - Notes on our weekly work meetings
  • GccTicketList - Lists assigned and open tickets over all GCC tracs
  • GccProjects - Matrix of ongoing projects and their relationships
  • GccManuals - How to use the software and servers that we have
  • GccLinks - Hyperlinks to papers and websites of interest
  • GccTeam - Members of the group
  • GccCalendar - Meetings etc
  • GccGroup - Our mailing list and group discussion site
  • GccServers - How to connect to our servers
  • GccIfolder - How to connect to our iFolder
  • GccLogs - Logbooks of GCC people

BioAssist

Please edit ;-)